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| author | Paul Buetow <paul@buetow.org> | 2025-12-30 10:17:31 +0200 |
|---|---|---|
| committer | Paul Buetow <paul@buetow.org> | 2025-12-30 10:17:31 +0200 |
| commit | 4d2e2a870fbf5e3ba60fc88f6c7a394baf8ae6db (patch) | |
| tree | 8766e539fd43348d113fda94f56e15463f29c658 /gemfeed/DRAFT-f3s-kubernetes-with-freebsd-part-8b.html | |
| parent | 105ac52e715728f0fe5b970a0a7a52059f66915e (diff) | |
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diff --git a/gemfeed/DRAFT-f3s-kubernetes-with-freebsd-part-8b.html b/gemfeed/DRAFT-f3s-kubernetes-with-freebsd-part-8b.html new file mode 100644 index 00000000..d598c631 --- /dev/null +++ b/gemfeed/DRAFT-f3s-kubernetes-with-freebsd-part-8b.html @@ -0,0 +1,1132 @@ +<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> +<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"> +<head> +<meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> +<title>f3s: Kubernetes with FreeBSD - Part 9: Enabling etcd Metrics</title> +<link rel="shortcut icon" type="image/gif" href="/favicon.ico" /> +<link rel="stylesheet" href="../style.css" /> +<link rel="stylesheet" href="style-override.css" /> +</head> +<body> +<p class="header"> +<a href="https://foo.zone">Home</a> | <a href="https://codeberg.org/snonux/foo.zone/src/branch/content-md/gemfeed/DRAFT-f3s-kubernetes-with-freebsd-part-8b.md">Markdown</a> | <a href="gemini://foo.zone/gemfeed/DRAFT-f3s-kubernetes-with-freebsd-part-8b.gmi">Gemini</a> +</p> +<h1 style='display: inline' id='f3s-kubernetes-with-freebsd---part-9-enabling-etcd-metrics'>f3s: Kubernetes with FreeBSD - Part 9: Enabling etcd Metrics</h1><br /> +<br /> +<h2 style='display: inline' id='introduction'>Introduction</h2><br /> +<br /> +<span>This post covers enabling etcd metrics monitoring for the k3s cluster. The etcd dashboard in Grafana initially showed no data because k3s uses an embedded etcd that doesn't expose metrics by default.</span><br /> +<br /> +<a class='textlink' href='./2025-12-07-f3s-kubernetes-with-freebsd-part-8.html'>Part 8: Observability</a><br /> +<br /> +<h2 style='display: inline' id='enabling-etcd-metrics-in-k3s'>Enabling etcd metrics in k3s</h2><br /> +<br /> +<span>On each control-plane node (r0, r1, r2), create /etc/rancher/k3s/config.yaml:</span><br /> +<br /> +<pre> +etcd-expose-metrics: true +</pre> +<br /> +<span>Then restart k3s on each node:</span><br /> +<br /> +<pre> +systemctl restart k3s +</pre> +<br /> +<span>After restarting, etcd metrics are available on port 2381:</span><br /> +<br /> +<pre> +curl http://127.0.0.1:2381/metrics | grep etcd +</pre> +<br /> +<h2 style='display: inline' id='configuring-prometheus-to-scrape-etcd'>Configuring Prometheus to scrape etcd</h2><br /> +<br /> +<span>In persistence-values.yaml, enable kubeEtcd with the node IP addresses:</span><br /> +<br /> +<pre> +kubeEtcd: + enabled: true + endpoints: + - 192.168.1.120 + - 192.168.1.121 + - 192.168.1.122 + service: + enabled: true + port: 2381 + targetPort: 2381 +</pre> +<br /> +<span>Apply the changes:</span><br /> +<br /> +<pre> +just upgrade +</pre> +<br /> +<h2 style='display: inline' id='verifying-etcd-metrics'>Verifying etcd metrics</h2><br /> +<br /> +<span>After the changes, all etcd targets are being scraped:</span><br /> +<br /> +<pre> +kubectl exec -n monitoring prometheus-prometheus-kube-prometheus-prometheus-0 \ + -c prometheus -- wget -qO- 'http://localhost:9090/api/v1/query?query=etcd_server_has_leader' | \ + jq -r '.data.result[] | "\(.metric.instance): \(.value[1])"' +</pre> +<br /> +<span>Output:</span><br /> +<br /> +<pre> +192.168.1.120:2381: 1 +192.168.1.121:2381: 1 +192.168.1.122:2381: 1 +</pre> +<br /> +<span>The etcd dashboard in Grafana now displays metrics including Raft proposals, leader elections, and peer round trip times.</span><br /> +<br /> +<h2 style='display: inline' id='complete-persistence-valuesyaml'>Complete persistence-values.yaml</h2><br /> +<br /> +<span>The complete updated persistence-values.yaml:</span><br /> +<br /> +<pre> +kubeEtcd: + enabled: true + endpoints: + - 192.168.1.120 + - 192.168.1.121 + - 192.168.1.122 + service: + enabled: true + port: 2381 + targetPort: 2381 + +prometheus: + prometheusSpec: + additionalScrapeConfigsSecret: + enabled: true + name: additional-scrape-configs + key: additional-scrape-configs.yaml + storageSpec: + volumeClaimTemplate: + spec: + storageClassName: "" + accessModes: ["ReadWriteOnce"] + resources: + requests: + storage: 10Gi + selector: + matchLabels: + type: local + app: prometheus + +grafana: + persistence: + enabled: true + type: pvc + existingClaim: "grafana-data-pvc" + + initChownData: + enabled: false + + podSecurityContext: + fsGroup: 911 + runAsUser: 911 + runAsGroup: 911 +</pre> +<br /> +<h2 style='display: inline' id='zfs-monitoring-for-freebsd-servers'>ZFS Monitoring for FreeBSD Servers</h2><br /> +<br /> +<span>The FreeBSD servers (f0, f1, f2) that provide NFS storage to the k3s cluster have ZFS filesystems. Monitoring ZFS performance is crucial for understanding storage performance and cache efficiency.</span><br /> +<br /> +<h3 style='display: inline' id='node-exporter-zfs-collector'>Node Exporter ZFS Collector</h3><br /> +<br /> +<span>The node_exporter running on each FreeBSD server (v1.9.1) includes a built-in ZFS collector that exposes metrics via sysctls. The ZFS collector is enabled by default and provides:</span><br /> +<br /> +<ul> +<li>ARC (Adaptive Replacement Cache) statistics</li> +<li>Cache hit/miss rates</li> +<li>Memory usage and allocation</li> +<li>MRU/MFU cache breakdown</li> +<li>Data vs metadata distribution</li> +</ul><br /> +<h3 style='display: inline' id='verifying-zfs-metrics'>Verifying ZFS Metrics</h3><br /> +<br /> +<span>On any FreeBSD server, check that ZFS metrics are being exposed:</span><br /> +<br /> +<pre> +paul@f0:~ % curl -s http://localhost:9100/metrics | grep node_zfs_arcstats | wc -l + 69 +</pre> +<br /> +<span>The metrics are automatically scraped by Prometheus through the existing static configuration in additional-scrape-configs.yaml which targets all FreeBSD servers on port 9100 with the os: freebsd label.</span><br /> +<br /> +<h3 style='display: inline' id='zfs-recording-rules'>ZFS Recording Rules</h3><br /> +<br /> +<span>Created recording rules for easier dashboard consumption in zfs-recording-rules.yaml:</span><br /> +<br /> +<pre> +apiVersion: monitoring.coreos.com/v1 +kind: PrometheusRule +metadata: + name: freebsd-zfs-rules + namespace: monitoring + labels: + release: prometheus +spec: + groups: + - name: freebsd-zfs-arc + interval: 30s + rules: + - record: node_zfs_arc_hit_rate_percent + expr: | + 100 * ( + rate(node_zfs_arcstats_hits_total{os="freebsd"}[5m]) / + (rate(node_zfs_arcstats_hits_total{os="freebsd"}[5m]) + + rate(node_zfs_arcstats_misses_total{os="freebsd"}[5m])) + ) + labels: + os: freebsd + - record: node_zfs_arc_memory_usage_percent + expr: | + 100 * ( + node_zfs_arcstats_size_bytes{os="freebsd"} / + node_zfs_arcstats_c_max_bytes{os="freebsd"} + ) + labels: + os: freebsd + # Additional rules for metadata %, target %, MRU/MFU %, etc. +</pre> +<br /> +<span>These recording rules calculate:</span><br /> +<br /> +<ul> +<li>ARC hit rate percentage</li> +<li>ARC memory usage percentage (current vs maximum)</li> +<li>ARC target percentage (target vs maximum)</li> +<li>Metadata vs data percentages</li> +<li>MRU vs MFU cache percentages</li> +<li>Demand data and metadata hit rates</li> +</ul><br /> +<h3 style='display: inline' id='grafana-dashboards'>Grafana Dashboards</h3><br /> +<br /> +<span>Created two comprehensive ZFS monitoring dashboards (zfs-dashboards.yaml):</span><br /> +<br /> +<span>**Dashboard 1: FreeBSD ZFS (per-host detailed view)**</span><br /> +<br /> +<span>Includes variables to select:</span><br /> +<ul> +<li>FreeBSD server (f0, f1, or f2)</li> +<li>ZFS pool (zdata, zroot, or all)</li> +</ul><br /> +<span>**Pool Overview Row:**</span><br /> +<ul> +<li>Pool Capacity gauge (with thresholds: green <70%, yellow <85%, red >85%)</li> +<li>Pool Health status (ONLINE/DEGRADED/FAULTED with color coding)</li> +<li>Total Pool Size stat</li> +<li>Free Space stat</li> +<li>Pool Space Usage Over Time (stacked: used + free)</li> +<li>Pool Capacity Trend time series</li> +</ul><br /> +<span>**Dataset Statistics Row:**</span><br /> +<ul> +<li>Table showing all datasets with columns: Pool, Dataset, Used, Available, Referenced</li> +<li>Automatically filters by selected pool</li> +</ul><br /> +<span>**ARC Cache Statistics Row:**</span><br /> +<ul> +<li>ARC Hit Rate gauge (red <70%, yellow <90%, green >=90%)</li> +<li>ARC Size time series (current, target, max)</li> +<li>ARC Memory Usage percentage gauge</li> +<li>ARC Hits vs Misses rate</li> +<li>ARC Data vs Metadata stacked time series</li> +</ul><br /> +<span>**Dashboard 2: FreeBSD ZFS Summary (cluster-wide overview)**</span><br /> +<br /> +<span>**Cluster-Wide Pool Statistics Row:**</span><br /> +<ul> +<li>Total Storage Capacity across all servers</li> +<li>Total Used space</li> +<li>Total Free space</li> +<li>Average Pool Capacity gauge</li> +<li>Pool Health Status (worst case across cluster)</li> +<li>Total Pool Space Usage Over Time</li> +<li>Per-Pool Capacity time series (all pools on all hosts)</li> +</ul><br /> +<span>**Per-Host Pool Breakdown Row:**</span><br /> +<ul> +<li>Bar gauge showing capacity by host and pool</li> +<li>Table with all pools: Host, Pool, Size, Used, Free, Capacity %, Health</li> +</ul><br /> +<span>**Cluster-Wide ARC Statistics Row:**</span><br /> +<ul> +<li>Average ARC Hit Rate gauge across all hosts</li> +<li>ARC Hit Rate by Host time series</li> +<li>Total ARC Size Across Cluster</li> +<li>Total ARC Hits vs Misses (cluster-wide sum)</li> +<li>ARC Size by Host</li> +</ul><br /> +<span>**Dashboard Visualization:**</span><br /> +<br /> +<a href='./f3s-kubernetes-with-freebsd-part-8b/grafana-zfs-dashboard.png'><img alt='ZFS monitoring dashboard in Grafana showing pool statistics and ARC cache metrics' title='ZFS monitoring dashboard in Grafana showing pool statistics and ARC cache metrics' src='./f3s-kubernetes-with-freebsd-part-8b/grafana-zfs-dashboard.png' /></a><br /> +<br /> +<h3 style='display: inline' id='deployment'>Deployment</h3><br /> +<br /> +<span>Applied the resources to the cluster:</span><br /> +<br /> +<pre> +cd /home/paul/git/conf/f3s/prometheus +kubectl apply -f zfs-recording-rules.yaml +kubectl apply -f zfs-dashboards.yaml +</pre> +<br /> +<span>Updated Justfile to include ZFS recording rules in install and upgrade targets:</span><br /> +<br /> +<pre> +install: + kubectl apply -f persistent-volumes.yaml + kubectl create secret generic additional-scrape-configs --from-file=additional-scrape-configs.yaml -n monitoring --dry-run=client -o yaml | kubectl apply -f - + helm install prometheus prometheus-community/kube-prometheus-stack --namespace monitoring -f persistence-values.yaml + kubectl apply -f freebsd-recording-rules.yaml + kubectl apply -f openbsd-recording-rules.yaml + kubectl apply -f zfs-recording-rules.yaml + just -f grafana-ingress/Justfile install +</pre> +<br /> +<h3 style='display: inline' id='verifying-zfs-metrics-in-prometheus'>Verifying ZFS Metrics in Prometheus</h3><br /> +<br /> +<span>Check that ZFS metrics are being collected:</span><br /> +<br /> +<pre> +kubectl exec -n monitoring prometheus-prometheus-kube-prometheus-prometheus-0 -c prometheus -- \ + wget -qO- 'http://localhost:9090/api/v1/query?query=node_zfs_arcstats_size_bytes' +</pre> +<br /> +<span>Check recording rules are calculating correctly:</span><br /> +<br /> +<pre> +kubectl exec -n monitoring prometheus-prometheus-kube-prometheus-prometheus-0 -c prometheus -- \ + wget -qO- 'http://localhost:9090/api/v1/query?query=node_zfs_arc_memory_usage_percent' +</pre> +<br /> +<span>Example output shows memory usage percentage for each FreeBSD server:</span><br /> +<br /> +<pre> +"result":[ + {"metric":{"instance":"192.168.2.130:9100","os":"freebsd"},"value":[...,"37.58"]}, + {"metric":{"instance":"192.168.2.131:9100","os":"freebsd"},"value":[...,"12.85"]}, + {"metric":{"instance":"192.168.2.132:9100","os":"freebsd"},"value":[...,"13.44"]} +] +</pre> +<br /> +<h3 style='display: inline' id='accessing-the-dashboards'>Accessing the Dashboards</h3><br /> +<br /> +<span>The dashboards are automatically imported by the Grafana sidecar and accessible at:</span><br /> +<br /> +<a class='textlink' href='https://grafana.f3s.buetow.org'>https://grafana.f3s.buetow.org</a><br /> +<br /> +<span>Navigate to Dashboards and search for:</span><br /> +<ul> +<li>"FreeBSD ZFS" - detailed per-host view with pool and dataset breakdowns</li> +<li>"FreeBSD ZFS Summary" - cluster-wide overview of all ZFS storage</li> +</ul><br /> +<h3 style='display: inline' id='key-metrics-to-monitor'>Key Metrics to Monitor</h3><br /> +<br /> +<span>**ARC Hit Rate:** Should typically be above 90% for optimal performance. Lower hit rates indicate the ARC cache is too small or workload has poor locality.</span><br /> +<br /> +<span>**ARC Memory Usage:** Shows how much of the maximum ARC size is being used. If consistently at or near maximum, the ARC is effectively utilizing available memory.</span><br /> +<br /> +<span>**Data vs Metadata:** Typically data should dominate, but workloads with many small files will show higher metadata percentages.</span><br /> +<br /> +<span>**MRU vs MFU:** Most Recently Used vs Most Frequently Used cache. The ratio depends on workload characteristics.</span><br /> +<br /> +<span>**Pool Capacity:** Monitor pool usage to ensure adequate free space. ZFS performance degrades when pools exceed 80% capacity.</span><br /> +<br /> +<span>**Pool Health:** Should always show ONLINE (green). DEGRADED (yellow) indicates a disk issue requiring attention. FAULTED (red) requires immediate action.</span><br /> +<br /> +<span>**Dataset Usage:** Track which datasets are consuming the most space to identify growth trends and plan capacity.</span><br /> +<br /> +<h3 style='display: inline' id='zfs-pool-and-dataset-metrics-via-textfile-collector'>ZFS Pool and Dataset Metrics via Textfile Collector</h3><br /> +<br /> +<span>To complement the ARC statistics from node_exporter's built-in ZFS collector, I added pool capacity and dataset metrics using the textfile collector feature.</span><br /> +<br /> +<span>Created a script at /usr/local/bin/zfs_pool_metrics.sh on each FreeBSD server:</span><br /> +<br /> +<pre> +#!/bin/sh +# ZFS Pool and Dataset Metrics Collector for Prometheus + +OUTPUT_FILE="/var/tmp/node_exporter/zfs_pools.prom.$$" +FINAL_FILE="/var/tmp/node_exporter/zfs_pools.prom" + +mkdir -p /var/tmp/node_exporter + +{ + # Pool metrics + echo "# HELP zfs_pool_size_bytes Total size of ZFS pool" + echo "# TYPE zfs_pool_size_bytes gauge" + echo "# HELP zfs_pool_allocated_bytes Allocated space in ZFS pool" + echo "# TYPE zfs_pool_allocated_bytes gauge" + echo "# HELP zfs_pool_free_bytes Free space in ZFS pool" + echo "# TYPE zfs_pool_free_bytes gauge" + echo "# HELP zfs_pool_capacity_percent Capacity percentage" + echo "# TYPE zfs_pool_capacity_percent gauge" + echo "# HELP zfs_pool_health Pool health (0=ONLINE, 1=DEGRADED, 2=FAULTED)" + echo "# TYPE zfs_pool_health gauge" + + zpool list -Hp -o name,size,allocated,free,capacity,health | \ + while IFS=$'\t' read name size alloc free cap health; do + case "$health" in + ONLINE) health_val=0 ;; + DEGRADED) health_val=1 ;; + FAULTED) health_val=2 ;; + *) health_val=6 ;; + esac + cap_num=$(echo "$cap" | sed 's/%//') + + echo "zfs_pool_size_bytes{pool=\"$name\"} $size" + echo "zfs_pool_allocated_bytes{pool=\"$name\"} $alloc" + echo "zfs_pool_free_bytes{pool=\"$name\"} $free" + echo "zfs_pool_capacity_percent{pool=\"$name\"} $cap_num" + echo "zfs_pool_health{pool=\"$name\"} $health_val" + done + + # Dataset metrics + echo "# HELP zfs_dataset_used_bytes Used space in dataset" + echo "# TYPE zfs_dataset_used_bytes gauge" + echo "# HELP zfs_dataset_available_bytes Available space" + echo "# TYPE zfs_dataset_available_bytes gauge" + echo "# HELP zfs_dataset_referenced_bytes Referenced space" + echo "# TYPE zfs_dataset_referenced_bytes gauge" + + zfs list -Hp -t filesystem -o name,used,available,referenced | \ + while IFS=$'\t' read name used avail ref; do + pool=$(echo "$name" | cut -d/ -f1) + echo "zfs_dataset_used_bytes{pool=\"$pool\",dataset=\"$name\"} $used" + echo "zfs_dataset_available_bytes{pool=\"$pool\",dataset=\"$name\"} $avail" + echo "zfs_dataset_referenced_bytes{pool=\"$pool\",dataset=\"$name\"} $ref" + done +} > "$OUTPUT_FILE" + +mv "$OUTPUT_FILE" "$FINAL_FILE" +</pre> +<br /> +<span>Deployed to all FreeBSD servers:</span><br /> +<br /> +<pre> +for host in f0 f1 f2; do + scp /tmp/zfs_pool_metrics.sh paul@$host:/tmp/ + ssh paul@$host 'doas mv /tmp/zfs_pool_metrics.sh /usr/local/bin/ && \ + doas chmod +x /usr/local/bin/zfs_pool_metrics.sh' +done +</pre> +<br /> +<span>Set up cron jobs to run every minute:</span><br /> +<br /> +<pre> +for host in f0 f1 f2; do + ssh paul@$host 'echo "* * * * * /usr/local/bin/zfs_pool_metrics.sh >/dev/null 2>&1" | \ + doas crontab -' +done +</pre> +<br /> +<span>The textfile collector (already configured with --collector.textfile.directory=/var/tmp/node_exporter) automatically picks up the metrics.</span><br /> +<br /> +<span>Verify metrics are being exposed:</span><br /> +<br /> +<pre> +paul@f0:~ % curl -s http://localhost:9100/metrics | grep "^zfs_pool" | head -5 +zfs_pool_allocated_bytes{pool="zdata"} 6.47622733824e+11 +zfs_pool_allocated_bytes{pool="zroot"} 5.3338578944e+10 +zfs_pool_capacity_percent{pool="zdata"} 64 +zfs_pool_capacity_percent{pool="zroot"} 10 +zfs_pool_free_bytes{pool="zdata"} 3.48809678848e+11 +</pre> +<br /> +<h2 style='display: inline' id='summary'>Summary</h2><br /> +<br /> +<span>Enhanced the f3s cluster observability by:</span><br /> +<br /> +<ul> +<li>Enabling etcd metrics monitoring for the k3s embedded etcd</li> +<li>Implementing comprehensive ZFS monitoring for FreeBSD storage servers</li> +<li>Creating recording rules for calculated metrics (ARC hit rates, memory usage, etc.)</li> +<li>Deploying Grafana dashboards for visualization</li> +<li>Configuring automatic dashboard import via ConfigMap labels</li> +</ul><br /> +<span>The monitoring stack now provides visibility into both cluster control plane health (etcd) and storage performance (ZFS).</span><br /> +<br /> +<a class='textlink' href='https://codeberg.org/snonux/conf/src/branch/master/f3s/prometheus'>prometheus configuration on Codeberg</a><br /> +<br /> +<h2 style='display: inline' id='distributed-tracing-with-grafana-tempo'>Distributed Tracing with Grafana Tempo</h2><br /> +<br /> +<span>After implementing logs (Loki) and metrics (Prometheus), the final pillar of observability is distributed tracing. Grafana Tempo provides distributed tracing capabilities that help understand request flows across microservices.</span><br /> +<br /> +<h3 style='display: inline' id='why-distributed-tracing'>Why Distributed Tracing?</h3><br /> +<br /> +<span>In a microservices architecture, a single user request may traverse multiple services. Distributed tracing:</span><br /> +<br /> +<ul> +<li>Tracks requests across service boundaries</li> +<li>Identifies performance bottlenecks</li> +<li>Visualizes service dependencies</li> +<li>Correlates with logs and metrics</li> +<li>Helps debug complex distributed systems</li> +</ul><br /> +<h3 style='display: inline' id='deploying-grafana-tempo'>Deploying Grafana Tempo</h3><br /> +<br /> +<span>Tempo is deployed in monolithic mode, following the same pattern as Loki's SingleBinary deployment.</span><br /> +<br /> +<span>#### Configuration Strategy</span><br /> +<br /> +<span>**Deployment Mode:** Monolithic (all components in one process)</span><br /> +<ul> +<li>Simpler operation than microservices mode</li> +<li>Suitable for the cluster scale</li> +<li>Consistent with Loki deployment pattern</li> +</ul><br /> +<span>**Storage:** Filesystem backend using hostPath</span><br /> +<ul> +<li>10Gi storage at /data/nfs/k3svolumes/tempo/data</li> +<li>7-day retention (168h)</li> +<li>Local storage is the only option for monolithic mode</li> +</ul><br /> +<span>**OTLP Receivers:** Standard OpenTelemetry Protocol ports</span><br /> +<ul> +<li>gRPC: 4317</li> +<li>HTTP: 4318</li> +<li>Bind to 0.0.0.0 to avoid Tempo 2.7+ localhost-only binding issue</li> +</ul><br /> +<span>#### Tempo Deployment Files</span><br /> +<br /> +<span>Created in /home/paul/git/conf/f3s/tempo/:</span><br /> +<br /> +<span>**values.yaml** - Helm chart configuration:</span><br /> +<br /> +<pre> +tempo: + retention: 168h + storage: + trace: + backend: local + local: + path: /var/tempo/traces + wal: + path: /var/tempo/wal + receivers: + otlp: + protocols: + grpc: + endpoint: 0.0.0.0:4317 + http: + endpoint: 0.0.0.0:4318 + +persistence: + enabled: true + size: 10Gi + storageClassName: "" + +resources: + limits: + cpu: 1000m + memory: 2Gi + requests: + cpu: 500m + memory: 1Gi +</pre> +<br /> +<span>**persistent-volumes.yaml** - Storage configuration:</span><br /> +<br /> +<pre> +apiVersion: v1 +kind: PersistentVolume +metadata: + name: tempo-data-pv +spec: + capacity: + storage: 10Gi + accessModes: + - ReadWriteOnce + persistentVolumeReclaimPolicy: Retain + hostPath: + path: /data/nfs/k3svolumes/tempo/data +--- +apiVersion: v1 +kind: PersistentVolumeClaim +metadata: + name: tempo-data-pvc + namespace: monitoring +spec: + storageClassName: "" + accessModes: + - ReadWriteOnce + resources: + requests: + storage: 10Gi +</pre> +<br /> +<span>**Grafana Datasource Provisioning**</span><br /> +<br /> +<span>All Grafana datasources (Prometheus, Alertmanager, Loki, Tempo) are provisioned via a unified ConfigMap that is directly mounted to the Grafana pod. This approach ensures datasources are loaded on startup without requiring sidecar-based discovery.</span><br /> +<br /> +<span>In /home/paul/git/conf/f3s/prometheus/grafana-datasources-all.yaml:</span><br /> +<br /> +<pre> +apiVersion: v1 +kind: ConfigMap +metadata: + name: grafana-datasources-all + namespace: monitoring +data: + datasources.yaml: | + apiVersion: 1 + datasources: + - name: Prometheus + type: prometheus + uid: prometheus + url: http://prometheus-kube-prometheus-prometheus.monitoring:9090/ + access: proxy + isDefault: true + - name: Alertmanager + type: alertmanager + uid: alertmanager + url: http://prometheus-kube-prometheus-alertmanager.monitoring:9093/ + - name: Loki + type: loki + uid: loki + url: http://loki.monitoring.svc.cluster.local:3100 + - name: Tempo + type: tempo + uid: tempo + url: http://tempo.monitoring.svc.cluster.local:3200 + jsonData: + tracesToLogsV2: + datasourceUid: loki + spanStartTimeShift: -1h + spanEndTimeShift: 1h + tracesToMetrics: + datasourceUid: prometheus + serviceMap: + datasourceUid: prometheus + nodeGraph: + enabled: true +</pre> +<br /> +<span>The kube-prometheus-stack Helm values (persistence-values.yaml) are configured to:</span><br /> +<ul> +<li>Disable sidecar-based datasource provisioning</li> +<li>Mount grafana-datasources-all ConfigMap directly to /etc/grafana/provisioning/datasources/</li> +</ul><br /> +<span>This direct mounting approach is simpler and more reliable than sidecar-based discovery.</span><br /> +<br /> +<span>#### Installation</span><br /> +<br /> +<pre> +cd /home/paul/git/conf/f3s/tempo +just install +</pre> +<br /> +<span>Verify Tempo is running:</span><br /> +<br /> +<pre> +kubectl get pods -n monitoring -l app.kubernetes.io/name=tempo +kubectl exec -n monitoring <tempo-pod> -- wget -qO- http://localhost:3200/ready +</pre> +<br /> +<h3 style='display: inline' id='configuring-grafana-alloy-for-trace-collection'>Configuring Grafana Alloy for Trace Collection</h3><br /> +<br /> +<span>Updated /home/paul/git/conf/f3s/loki/alloy-values.yaml to add OTLP receivers for traces while maintaining existing log collection.</span><br /> +<br /> +<span>#### OTLP Receiver Configuration</span><br /> +<br /> +<span>Added to Alloy configuration after the log collection pipeline:</span><br /> +<br /> +<pre> +// OTLP receiver for traces via gRPC and HTTP +otelcol.receiver.otlp "default" { + grpc { + endpoint = "0.0.0.0:4317" + } + http { + endpoint = "0.0.0.0:4318" + } + output { + traces = [otelcol.processor.batch.default.input] + } +} + +// Batch processor for efficient trace forwarding +otelcol.processor.batch "default" { + timeout = "5s" + send_batch_size = 100 + send_batch_max_size = 200 + output { + traces = [otelcol.exporter.otlp.tempo.input] + } +} + +// OTLP exporter to send traces to Tempo +otelcol.exporter.otlp "tempo" { + client { + endpoint = "tempo.monitoring.svc.cluster.local:4317" + tls { + insecure = true + } + compression = "gzip" + } +} +</pre> +<br /> +<span>The batch processor reduces network overhead by accumulating spans before forwarding to Tempo.</span><br /> +<br /> +<span>#### Upgrade Alloy</span><br /> +<br /> +<pre> +cd /home/paul/git/conf/f3s/loki +just upgrade +</pre> +<br /> +<span>Verify OTLP receivers are listening:</span><br /> +<br /> +<pre> +kubectl logs -n monitoring -l app.kubernetes.io/name=alloy | grep -i "otlp.*receiver" +kubectl exec -n monitoring <alloy-pod> -- netstat -ln | grep -E ':(4317|4318)' +</pre> +<br /> +<h3 style='display: inline' id='demo-tracing-application'>Demo Tracing Application</h3><br /> +<br /> +<span>Created a three-tier Python application to demonstrate distributed tracing in action.</span><br /> +<br /> +<span>#### Application Architecture</span><br /> +<br /> +<pre> +User → Frontend (Flask:5000) → Middleware (Flask:5001) → Backend (Flask:5002) + ↓ ↓ ↓ + Alloy (OTLP:4317) → Tempo → Grafana +</pre> +<br /> +<span>**Frontend Service:**</span><br /> +<ul> +<li>Receives HTTP requests at /api/process</li> +<li>Forwards to middleware service</li> +<li>Creates parent span for the entire request</li> +</ul><br /> +<span>**Middleware Service:**</span><br /> +<ul> +<li>Transforms data at /api/transform</li> +<li>Calls backend service</li> +<li>Creates child span linked to frontend</li> +</ul><br /> +<span>**Backend Service:**</span><br /> +<ul> +<li>Returns data at /api/data</li> +<li>Simulates database query (100ms sleep)</li> +<li>Creates leaf span in the trace</li> +</ul><br /> +<span>#### OpenTelemetry Instrumentation</span><br /> +<br /> +<span>All services use Python OpenTelemetry libraries:</span><br /> +<br /> +<span>**Dependencies:**</span><br /> +<pre> +flask==3.0.0 +requests==2.31.0 +opentelemetry-distro==0.49b0 +opentelemetry-exporter-otlp==1.28.0 +opentelemetry-instrumentation-flask==0.49b0 +opentelemetry-instrumentation-requests==0.49b0 +</pre> +<br /> +<span>**Auto-instrumentation pattern** (used in all services):</span><br /> +<br /> +<!-- Generator: GNU source-highlight 3.1.9 +by Lorenzo Bettini +http://www.lorenzobettini.it +http://www.gnu.org/software/src-highlite --> +<pre><b><u><font color="#000000">from</font></u></b> opentelemetry <b><u><font color="#000000">import</font></u></b> trace +<b><u><font color="#000000">from</font></u></b> opentelemetry.sdk.trace <b><u><font color="#000000">import</font></u></b> TracerProvider +<b><u><font color="#000000">from</font></u></b> opentelemetry.exporter.otlp.proto.grpc.trace_exporter <b><u><font color="#000000">import</font></u></b> OTLPSpanExporter +<b><u><font color="#000000">from</font></u></b> opentelemetry.instrumentation.flask <b><u><font color="#000000">import</font></u></b> FlaskInstrumentor +<b><u><font color="#000000">from</font></u></b> opentelemetry.instrumentation.requests <b><u><font color="#000000">import</font></u></b> RequestsInstrumentor +<b><u><font color="#000000">from</font></u></b> opentelemetry.sdk.resources <b><u><font color="#000000">import</font></u></b> Resource + +<i><font color="silver"># Define service identity</font></i> +resource = Resource(attributes={ + <font color="#808080">"service.name"</font>: <font color="#808080">"frontend"</font>, + <font color="#808080">"service.namespace"</font>: <font color="#808080">"tracing-demo"</font>, + <font color="#808080">"service.version"</font>: <font color="#808080">"1.0.0"</font> +}) + +provider = TracerProvider(resource=resource) + +<i><font color="silver"># Export to Alloy</font></i> +otlp_exporter = OTLPSpanExporter( + endpoint=<font color="#808080">"http://alloy.monitoring.svc.cluster.local:4317"</font>, + insecure=True +) + +processor = BatchSpanProcessor(otlp_exporter) +provider.add_span_processor(processor) +trace.set_tracer_provider(provider) + +<i><font color="silver"># Auto-instrument Flask and requests</font></i> +FlaskInstrumentor().instrument_app(app) +RequestsInstrumentor().instrument() +</pre> +<br /> +<span>The auto-instrumentation automatically:</span><br /> +<ul> +<li>Creates spans for HTTP requests</li> +<li>Propagates trace context via W3C Trace Context headers</li> +<li>Links parent and child spans across service boundaries</li> +</ul><br /> +<span>#### Deployment</span><br /> +<br /> +<span>Created Helm chart in /home/paul/git/conf/f3s/tracing-demo/ with three separate deployments, services, and an ingress.</span><br /> +<br /> +<span>Build and deploy:</span><br /> +<br /> +<pre> +cd /home/paul/git/conf/f3s/tracing-demo +just build +just import +just install +</pre> +<br /> +<span>Verify deployment:</span><br /> +<br /> +<pre> +kubectl get pods -n services | grep tracing-demo +kubectl get ingress -n services tracing-demo-ingress +</pre> +<br /> +<span>Access the application at:</span><br /> +<br /> +<a class='textlink' href='http://tracing-demo.f3s.buetow.org'>http://tracing-demo.f3s.buetow.org</a><br /> +<br /> +<h3 style='display: inline' id='visualizing-traces-in-grafana'>Visualizing Traces in Grafana</h3><br /> +<br /> +<span>The Tempo datasource is automatically discovered by Grafana through the ConfigMap label.</span><br /> +<br /> +<span>#### Accessing Traces</span><br /> +<br /> +<span>Navigate to Grafana → Explore → Select "Tempo" datasource</span><br /> +<br /> +<span>**Search Interface:**</span><br /> +<ul> +<li>Search by Trace ID</li> +<li>Search by service name</li> +<li>Search by tags</li> +</ul><br /> +<span>**TraceQL Queries:**</span><br /> +<br /> +<span>Find all traces from demo app:</span><br /> +<pre> +{ resource.service.namespace = "tracing-demo" } +</pre> +<br /> +<span>Find slow requests (>200ms):</span><br /> +<pre> +{ duration > 200ms } +</pre> +<br /> +<span>Find traces from specific service:</span><br /> +<pre> +{ resource.service.name = "frontend" } +</pre> +<br /> +<span>Find errors:</span><br /> +<pre> +{ status = error } +</pre> +<br /> +<span>Complex query - frontend traces calling middleware:</span><br /> +<pre> +{ resource.service.namespace = "tracing-demo" } && { span.http.status_code >= 500 } +</pre> +<br /> +<span>#### Service Graph Visualization</span><br /> +<br /> +<span>The service graph shows visual connections between services:</span><br /> +<br /> +<span>1. Navigate to Explore → Tempo</span><br /> +<span>2. Enable "Service Graph" view</span><br /> +<span>3. Shows: Frontend → Middleware → Backend with request rates</span><br /> +<br /> +<span>The service graph uses Prometheus metrics generated from trace data.</span><br /> +<br /> +<h3 style='display: inline' id='correlation-between-observability-signals'>Correlation Between Observability Signals</h3><br /> +<br /> +<span>Tempo integrates with Loki and Prometheus to provide unified observability.</span><br /> +<br /> +<span>#### Traces-to-Logs</span><br /> +<br /> +<span>Click on any span in a trace to see related logs:</span><br /> +<br /> +<span>1. View trace in Grafana</span><br /> +<span>2. Click on a span</span><br /> +<span>3. Select "Logs for this span"</span><br /> +<span>4. Loki shows logs filtered by:</span><br /> +<span> * Time range (span duration ± 1 hour)</span><br /> +<span> * Service name</span><br /> +<span> * Namespace</span><br /> +<span> * Pod</span><br /> +<br /> +<span>This helps correlate what the service was doing when the span was created.</span><br /> +<br /> +<span>#### Traces-to-Metrics</span><br /> +<br /> +<span>View Prometheus metrics for services in the trace:</span><br /> +<br /> +<span>1. View trace in Grafana</span><br /> +<span>2. Select "Metrics" tab</span><br /> +<span>3. Shows metrics like:</span><br /> +<span> * Request rate</span><br /> +<span> * Error rate</span><br /> +<span> * Duration percentiles</span><br /> +<br /> +<span>#### Logs-to-Traces</span><br /> +<br /> +<span>From logs, you can jump to related traces:</span><br /> +<br /> +<span>1. In Loki, logs that contain trace IDs are automatically linked</span><br /> +<span>2. Click the trace ID to view the full trace</span><br /> +<span>3. See the complete request flow</span><br /> +<br /> +<h3 style='display: inline' id='generating-traces-for-testing'>Generating Traces for Testing</h3><br /> +<br /> +<span>Test the demo application:</span><br /> +<br /> +<pre> +curl http://tracing-demo.f3s.buetow.org/api/process +</pre> +<br /> +<span>Load test (generates 50 traces):</span><br /> +<br /> +<pre> +cd /home/paul/git/conf/f3s/tracing-demo +just load-test +</pre> +<br /> +<span>Each request creates a distributed trace spanning all three services.</span><br /> +<br /> +<h3 style='display: inline' id='verifying-the-complete-pipeline'>Verifying the Complete Pipeline</h3><br /> +<br /> +<span>Check the trace flow end-to-end:</span><br /> +<br /> +<span>**1. Application generates traces:**</span><br /> +<pre> +kubectl logs -n services -l app=tracing-demo-frontend | grep -i trace +</pre> +<br /> +<span>**2. Alloy receives traces:**</span><br /> +<pre> +kubectl logs -n monitoring -l app.kubernetes.io/name=alloy | grep -i otlp +</pre> +<br /> +<span>**3. Tempo stores traces:**</span><br /> +<pre> +kubectl logs -n monitoring -l app.kubernetes.io/name=tempo | grep -i trace +</pre> +<br /> +<span>**4. Grafana displays traces:**</span><br /> +<span>Navigate to Explore → Tempo → Search for traces</span><br /> +<br /> +<h3 style='display: inline' id='practical-example-viewing-a-distributed-trace'>Practical Example: Viewing a Distributed Trace</h3><br /> +<br /> +<span>Let's generate a trace and examine it in Grafana.</span><br /> +<br /> +<span>**1. Generate a trace by calling the demo application:**</span><br /> +<br /> +<pre> +curl -H "Host: tracing-demo.f3s.buetow.org" http://r0/api/process +</pre> +<br /> +<span>**Response (HTTP 200):**</span><br /> +<br /> +<!-- Generator: GNU source-highlight 3.1.9 +by Lorenzo Bettini +http://www.lorenzobettini.it +http://www.gnu.org/software/src-highlite --> +<pre>{ + "middleware_response": { + "backend_data": { + "data": { + "id": <font color="#000000">12345</font>, + "query_time_ms": <font color="#000000">100.0</font>, + "timestamp": "<font color="#808080">2025-12-28T18:35:01.064538</font>", + "value": "<font color="#808080">Sample data from backend service</font>" + }, + "service": "<font color="#808080">backend</font>" + }, + "middleware_processed": <b><u><font color="#000000">true</font></u></b>, + "original_data": { + "source": "<font color="#808080">GET request</font>" + }, + "transformation_time_ms": <font color="#000000">50</font> + }, + "request_data": { + "source": "<font color="#808080">GET request</font>" + }, + "service": "<font color="#808080">frontend</font>", + "status": "<font color="#808080">success</font>" +} +</pre> +<br /> +<span>**2. Find the trace in Tempo via API:**</span><br /> +<br /> +<span>After a few seconds (for batch export), search for recent traces:</span><br /> +<br /> +<pre> +kubectl exec -n monitoring tempo-0 -- wget -qO- \ + 'http://localhost:3200/api/search?tags=service.namespace%3Dtracing-demo&limit=5' 2>/dev/null | \ + python3 -m json.tool +</pre> +<br /> +<span>Returns traces including:</span><br /> +<br /> +<!-- Generator: GNU source-highlight 3.1.9 +by Lorenzo Bettini +http://www.lorenzobettini.it +http://www.gnu.org/software/src-highlite --> +<pre>{ + "traceID": "<font color="#808080">4be1151c0bdcd5625ac7e02b98d95bd5</font>", + "rootServiceName": "<font color="#808080">frontend</font>", + "rootTraceName": "<font color="#808080">GET /api/process</font>", + "durationMs": <font color="#000000">221</font> +} +</pre> +<br /> +<span>**3. Fetch complete trace details:**</span><br /> +<br /> +<pre> +kubectl exec -n monitoring tempo-0 -- wget -qO- \ + 'http://localhost:3200/api/traces/4be1151c0bdcd5625ac7e02b98d95bd5' 2>/dev/null | \ + python3 -m json.tool +</pre> +<br /> +<span>**Trace structure (8 spans across 3 services):**</span><br /> +<br /> +<pre> +Trace ID: 4be1151c0bdcd5625ac7e02b98d95bd5 +Services: 3 (frontend, middleware, backend) + +Service: frontend + └─ GET /api/process 221.10ms (HTTP server span) + └─ frontend-process 216.23ms (custom business logic span) + └─ POST 209.97ms (HTTP client span to middleware) + +Service: middleware + └─ POST /api/transform 186.02ms (HTTP server span) + └─ middleware-transform 180.96ms (custom business logic span) + └─ GET 127.52ms (HTTP client span to backend) + +Service: backend + └─ GET /api/data 103.93ms (HTTP server span) + └─ backend-get-data 102.11ms (custom business logic span with 100ms sleep) +</pre> +<br /> +<span>**4. View the trace in Grafana UI:**</span><br /> +<br /> +<span>Navigate to: Grafana → Explore → Tempo datasource</span><br /> +<br /> +<span>Search using TraceQL:</span><br /> +<pre> +{ resource.service.namespace = "tracing-demo" } +</pre> +<br /> +<span>Or directly open the trace by pasting the trace ID in the search box:</span><br /> +<pre> +4be1151c0bdcd5625ac7e02b98d95bd5 +</pre> +<br /> +<span>**5. Trace visualization:**</span><br /> +<br /> +<span>The trace waterfall view in Grafana shows the complete request flow with timing:</span><br /> +<br /> +<a href='./f3s-kubernetes-with-freebsd-part-8b/grafana-tempo-trace.png'><img alt='Distributed trace visualization in Grafana Tempo showing Frontend → Middleware → Backend spans' title='Distributed trace visualization in Grafana Tempo showing Frontend → Middleware → Backend spans' src='./f3s-kubernetes-with-freebsd-part-8b/grafana-tempo-trace.png' /></a><br /> +<br /> +<span>For additional examples of Tempo trace visualization, see also:</span><br /> +<br /> +<a class='textlink' href='https://foo.zone/gemfeed/2025-12-24-x-rag-observability-hackathon.html'>X-RAG Observability Hackathon (more Grafana Tempo screenshots)</a><br /> +<br /> +<span>The trace reveals the distributed request flow:</span><br /> +<ul> +<li>**Frontend (221ms)**: Receives GET /api/process, executes business logic, calls middleware</li> +<li>**Middleware (186ms)**: Receives POST /api/transform, transforms data, calls backend</li> +<li>**Backend (104ms)**: Receives GET /api/data, simulates database query with 100ms sleep</li> +<li>**Total request time**: 221ms end-to-end</li> +<li>**Span propagation**: W3C Trace Context headers automatically link all spans</li> +</ul><br /> +<span>**6. Service graph visualization:**</span><br /> +<br /> +<span>The service graph is automatically generated from traces and shows service dependencies. For examples of service graph visualization in Grafana, see the screenshots in the X-RAG Observability Hackathon blog post.</span><br /> +<br /> +<a class='textlink' href='https://foo.zone/gemfeed/2025-12-24-x-rag-observability-hackathon.html'>X-RAG Observability Hackathon (includes service graph screenshots)</a><br /> +<br /> +<span>This visualization helps identify:</span><br /> +<ul> +<li>Request rates between services</li> +<li>Average latency for each hop</li> +<li>Error rates (if any)</li> +<li>Service dependencies and communication patterns</li> +</ul><br /> +<h3 style='display: inline' id='storage-and-retention'>Storage and Retention</h3><br /> +<br /> +<span>Monitor Tempo storage usage:</span><br /> +<br /> +<pre> +kubectl exec -n monitoring <tempo-pod> -- df -h /var/tempo +</pre> +<br /> +<span>With 10Gi storage and 7-day retention, the system handles moderate trace volumes. If storage fills up:</span><br /> +<br /> +<ul> +<li>Reduce retention to 72h (3 days)</li> +<li>Implement sampling in Alloy</li> +<li>Increase PV size</li> +</ul><br /> +<h3 style='display: inline' id='complete-observability-stack'>Complete Observability Stack</h3><br /> +<br /> +<span>The f3s cluster now has complete observability:</span><br /> +<br /> +<span>**Metrics** (Prometheus):</span><br /> +<ul> +<li>Cluster resource usage</li> +<li>Application metrics</li> +<li>Node metrics (FreeBSD ZFS, OpenBSD edge)</li> +<li>etcd health</li> +</ul><br /> +<span>**Logs** (Loki):</span><br /> +<ul> +<li>All pod logs</li> +<li>Structured log collection</li> +<li>Log aggregation and search</li> +</ul><br /> +<span>**Traces** (Tempo):</span><br /> +<ul> +<li>Distributed request tracing</li> +<li>Service dependency mapping</li> +<li>Performance profiling</li> +<li>Error tracking</li> +</ul><br /> +<span>**Visualization** (Grafana):</span><br /> +<ul> +<li>Unified dashboards</li> +<li>Correlation between metrics, logs, and traces</li> +<li>Service graphs</li> +<li>Alerts</li> +</ul><br /> +<h3 style='display: inline' id='configuration-files'>Configuration Files</h3><br /> +<br /> +<span>All configuration files are available on Codeberg:</span><br /> +<br /> +<a class='textlink' href='https://codeberg.org/snonux/conf/src/branch/master/f3s/tempo'>Tempo configuration</a><br /> +<a class='textlink' href='https://codeberg.org/snonux/conf/src/branch/master/f3s/loki'>Alloy configuration (updated for traces)</a><br /> +<a class='textlink' href='https://codeberg.org/snonux/conf/src/branch/master/f3s/tracing-demo'>Demo tracing application</a><br /> +<p class="footer"> + Generated with <a href="https://codeberg.org/snonux/gemtexter">Gemtexter 3.0.1-develop</a> | + served by <a href="https://www.OpenBSD.org">OpenBSD</a>/<a href="https://man.openbsd.org/relayd.8">relayd(8)</a>+<a href="https://man.openbsd.org/httpd.8">httpd(8)</a> | + <a href="https://foo.zone/site-mirrors.html">Site Mirrors</a> + <br /> + Webring: <a href="https://shring.sh/foo.zone/previous">previous</a> | <a href="https://shring.sh">shring</a> | <a href="https://shring.sh/foo.zone/next">next</a> +</p> +</body> +</html> |